Type: User
Company: University of Washington
Bio: Data science advocate in the arts, engineering, humanities and sciences. Molecular Data Scientist; ChemE @ UW, eScience @ UW
Location: Seattle
Blog: https://www.cheme.washington.edu/facultyfinder/david-beck
dacb's Projects
2015 Flight Delays and Cancellations data set analysis
Altair plotting demo for classrooms and informal learning settings
Automated Research Assistant
BLAST Assembly to Reference: tools for comparing assembled genomes to reference sequences
Bacterial RNA-Seq analysis pipeline (using BWA, R, DeSeq2)
Bio related C-language utilities
Supporting documents for the C-HACK 2022 event given to students
Continuous Integration example for Python
A package for creating rich, equivariant, structural and chemical features from protein structure data.
Example repository for Python CI with travis using conda for package management
Example Python codebase with continuous integration using GitHub actions
Example repository for Python CI with travis using pip for package management
a super basic tutorial on how to create a pytorch models for raw DNA sequences
Pythonic package development tutorial put together for the electrochemical society hackweek, Spring 2018
UW DIRECT DataScience Project, to [ Import / Process / Store / Report ] Data related to Electrochemical Impedance Measurements
Go Implementation of Hardrod Monte Carlo Model
A MWE of a flask/react/altair application
fosmm compatible json molecular mechanics parameter libraries
This repository estimates uncertainty using GANs and other machine learning models such as GPs and BNNs.
go agent based engine
Good description goes here