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Targeted Probe Design Pipeline. Using mWGS genome bin clusters, prokka annotation predictions, and blast+ databases for generation, processing and filtering probe sequences.
License: MIT License
Shell 0.51%
Python 99.49%
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Within the config setup, there needs to be a value for [blastn]
fields.
# Here you can a list of others to add, e.g.:
# fields = ['mismatch', 'gapopen', 'qstart', 'qend', 'sstart', 'send', 'evalue', 'bitscore']
Append after the commented line with:
Change this line in config.py
catch = 'catch_design.py'
and this line in example targeted_probe_config
file:
catch = ' catch_design.py'
to match the actual released name of catch
's script.