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followers: 27.0 following: 119.0 repos: 60.0 gists: 4.0

Name: Benjamin Leopold

Type: User

Bio: Look deeeeeep into my eye...

Location: Sol III

Benjamin Leopold's Projects

mbiome_pipelines

Microbiome Pipeline framework; for many types of pipes and their iterations.

mbiome_seqrun_qc

List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.

minibufexpl.vim

Elegant buffer explorer - takes very little screen space

miraculous

MIRAculous is a graphical interface for the sequence assembler MIRA.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nf-core-tools

Python package with helper tools for the nf-core community.

ngs_wrapper_scripts

NGS wrapper scripts written to simplify running NGS analysis programs.

osdf-python

A Python OSDF (Open Science Data Framework) client

osdf_submit

Stanford/JAX-GM submission metadata to OSDF; boilerplate files.

otu_db

Store results of 16S OTU clsuters to track and compare and analyze.

prokka

Rapid prokaryotic genome annotation

qinx

qstat Info from full XML output, parseable by job owner or job name, etc.

quact_db_mbiome

QuaCT :: Quality Control Tracking DB, for Sequencer Runs and Samples

rcfiles

Snagged idea from dotfiles repos. Includes many option files, aliases, and Makefile install script.

rsync-time-backup

Time Machine style backup with rsync.

scratch.vim

Plugin to create and use a scratch Vim buffer

sequencing_misc_scripts

Miscellaneous scripts I've written for use with results of genome/etc nucleotide sequencing.

simplefold.vim

Fork of SimpleFold.vim by Mauricio Fernandez. Space-optimized, configurable code folding for vim.

sixteens_nxf

16S Microbiome Analysis Pipeline. This version written in Nextflow.

statline.vim

Add useful informations to Vim statusline

sv_paired_bam_nxf

Pipeline to analyze structural variants producing VCF files, then merge them and annotate if in Exon.

symlinks

symbolic link maintenance utility

vcprompt

Version control information in your prompt

vim

The official Vim repository

vim-airline

lean & mean status/tabline for vim that's light as air

vim-ctrlspace

Vim Space Controller

vim-sayonara

:japanese_goblin: Sane buffer/window deletion.

vim-template

Simple templates plugin for Vim

vimfiles

All options, plugins, keymaps, submodules for the mightiest editor in the world.

visincr.vim

Dr. Chip's VisIncr and CalUtil plugins combined

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