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Bio Data Mining

This is a set of hand-on session codes for the online course 'Bio Data Mining' opened in the SKKU (GBE3071_41). The codes will be uploaded here every Monday. Please feel free to fork or clone the codes and learn yourself.

  • Week01: Simple Linear Regression
  • Week02: General Linear Model example (design matrix and contrast)
  • Week03: Prediction Framework
  • Week04: Peformance evaluation (sensitivity-specificty, Precision-Recall, F1), Regularized regression and feature selection (Functional connectivity)
  • Week05: Full lectures without code implementation (supervised learning methods)
  • Week06: Ensemble Methods - AdaBoost and Gradient Boosting
  • Week07: Dimensionality Reduction - Principal Component Analysis, Eigenface example
  • Week08: Full lectures without code implementation (PLS and CCA)
  • Week09: Full lectures without code implementation (Clustering)
  • Week10: Clustering analysis (Partitioning, Hierarchical clustering)
  • Week11: Factor analysis (adequacy test, factor extration, rotation)

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