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View Code? Open in Web Editor NEWA tool to aggregate and load TB data to Neo4j
License: GNU General Public License v3.0
A tool to aggregate and load TB data to Neo4j
License: GNU General Public License v3.0
Fix CheMBL Targets
Investigate adding STRING networks to the database.
provides known and hypothetical links between proteins that are weighted by a confidence score
create_uniprot_nodes
needs to be refactored.
How are we mapping Genes to Proteins?
We currently have:
Use QuickGo and requests to update DB.
Extract data from TBProfiler database
Cater for the following in protein.parent
when creating Protein Nodes
MT0511/MT0512
MT1076 MT1237 MT3197
MT1076 MT1237 MT3197
MT1558/MT1560
MT3455 MT3955
Rv0379 RVBD_0379
Rv0132c LH57_00740
Rv0229c RVBD_0229c
Rv0295c LH57_01610
Rv0094c Rv3467
Rv0678 RVBD_0678
We can get natural variants via the feature(NATURAL VARIANT)
in uniprotkb_column_names.
Do we need to have GO and Pathway mapping in the database?
Look into adding CDC1551 orthologs
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