cococou Goto Github PK

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常用命令

100-days-of-ml-code

100 Days of ML Coding

adna

Processing WGS aDNA data using the ReichLab protocol

bam-readcount

count DNA sequence reads in BAM files

biobambam2

Tools for early stage alignment file processing

bioinformatics_scripts

Just a bunch of scripts I use for bioinformatics -- feel free to use, reuse, and improve

cellid

Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.

centrifuge

Classifier for metagenomic sequences

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能

cnvkit

Copy number variant detection from targeted DNA sequencing

count_fq_q

count_fq_Q

david-annotation

Use DAVID API to get a functional annotation chart report.

deeplearningpython35

neuralnetworksanddeeplearning.com integrated scripts for Python 3.5.2 and Theano with CUDA support

deeptools

Tools to process and analyze deep sequencing data.

depmap_omics

CCLE RNA-seq pipline

dive-into-dl-pytorch

本项目将《动手学深度学习》(Dive into Deep Learning)原书中的MXNet实现改为PyTorch实现。

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

exon_annotation

exon_annotation

fade

Fragmentase Artifact Detection and Elimination

fastq

script to handle fastq file

flask-pymongo

PyMongo support for Flask applications

flasky

Companion code to my O'Reilly book "Flask Web Development".

gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gatk4-germline-snps-indels

Workflows for germline short variant discovery with GATK4

gc_correct

geckodriver

WebDriver <-> Marionette proxy

ggplot2

learning ggplot

giab_publications

This repository contains a list of publications pertinent to the Genome in a Bottle project

hello-world

to understand the usage of repository item