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The Koch bacillus (Mycobacterium tuberculosis) is an aerobic bacillus associated with tuberculosis disease. For more information, you can visit the following link:

wikipedia link <https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis>

Koch_bacillus is a Python package built to explore the analytic information of genetic Koch bacillus information. The Open Reading Frame (aka ORF) are a nucleotide sequence needed to codify a protein. Bacillus gen has a multiples ORF.

The dates are extracted from the "UCI Machine Learning" and they have the datalog format.

UCI link <https://archive.ics.uci.edu/ml/datasets/m.+Tuberculosis+Genes>

• tb_funtions.pl: This file contains general information about genes and its functionals classes.

• tb_data_XX.pl: This collection has a genetic detail from genes.

  In this package only need the ORF relations, "tb_to_tb_evalue" attribute.

The package has the following structure:

|---------------|--------------|-----------|-------------------------------------------| | - Data | | | (Data folder with tb_functions.pl file) | | | -- orfs | | (Data subfolder with tb_data_XX.pl files) | | - Doc | | | (document adictional folder) | | - Koch | | | (main folder with python files) | | | -- drawing | | (python file with drawing functions) | | | -- Orf | | (Analytic Kock bacillus python files) | | | | --- tests | (Analytic test files) | | | -- readwrite | | (read and writes methods implemented) | | | | --- tests | (read and write test files) | | - Test | | | (main test folder) | | - venv | | | (library root) |

Execute the main.py file.

All the python files have a main process which is able to test the different functions. Furthermore, test processes have been implemented in the test folders. For executing the main test process run "test_kock.py" from Test folder.

• 1.1. Número de ORFs por clase.

Because there are too many numbers of output results (class_Id), it is shown the top 10 with a vertical bar graph.

• 2.1. Número de clases con descripción "protein" y uno o más ORF.

In that case, the selected graph is a horizontal bar graph because it has only one measure and it's possible to show the indicator.

• 2.2. Promedio de ORFs cuya descripción contiene la palabra "hydro" y es de una longitud de 13.

The same case as the previous question.

• 3. Número de clases por dimensión.

We have eight results to be showed. In that case, a vertical bar can show the results correctly.