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A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

Home Page: https://microsud.github.io/Tools-Microbiome-Analysis/

R 24.21% CSS 75.79%

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Tools-Microbiome-Analysis

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You can cite this resource as:
Shetty, Sudarshan A., and Leo Lahti. Microbiome data science. Journal of biosciences 44, no. 5 (2019): 115.
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Zendo:

Do you want to join us and contribute to the open source microbiome community?

We are working on an open source project developing R/Bioc methods, benchmarking data, and educational material for microbiome research based on the SummarizedExperiment class and its derivatives.
More information please check our website R/Bioc microbiome ecosystem with SummarizedExperiment

Acknowledgments

The Academy of Finland (Grants 295741; 307127)
The SIAM Gravitation Grant 024.002.002
UNLOCK project of the Netherlands Organization for Scientific Research (NWO)
University of Turku, Department of Mathematics and Statistics
Molecular Ecology group, Laboratory of Microbiology, Wageningen University, The Netherlands
Medische Microbiologie en Infectiepreventie, University Medical Center Groningen, The Netherlands

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