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crispr-local

A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.

cs-self-learning

计算机自学指南

csf_aging

Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment

curatedmetagenomicdata

Curated Metagenomic Data of the Human Microbiome

cytev2

MacOS, iOS and Windows background screen recorder/reader for easy history search

c_amps-prediction

daily-python-scripts

A repository of python scripts that come in handy in automating day-to-day tasks

data-dockerfiles

a curated list of docker-compose files prepared for testing data engineering tools, databases and open source libraries.

data-science-interview-questions

data-science-introduction-with-r

R 语言数据科学导论 | Data Science Introduction with R

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

deeparg2.0

deepARG using deep semantic representation

deeparg_psi

A neural net python package to predict Antibiotic resistenance category based on Psi blast and Amino acid compositon. Heaveily inspired by https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0401-z

deeppocket

Ligand Binding Site detection using Deep Learning

deepspeed

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

deeptrasynergy

Drug Combinations using Multi-modal Deep Learning with Transformers

distribution-is-all-you-need

The basic distribution probability Tutorial for Deep Learning Researchers

dl-mo

The deeplearning methods for multi-omics data fusion

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

docker-chatgpt

< 10MB, One-click self-hosted ChatGPT, allowing access to various data sources and non-OpenAI models.

docker-slim

DockerSlim (docker-slim): Don't change anything in your Docker container image and minify it by up to 30x (and for compiled languages even more) making it secure too! (free and open source)

dockerized

Run popular commandline tools within docker

dolt

Dolt – It's Git for Data

doltpy

A Python API for Dolt

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

easy-translate

Use the state-of-the-art m2m100 to translate large data on CPU/GPU/TPU. Super Easy!

eqtlqc

eukcc

Tool to estimate genome quality of microbial eukaryotes

eukdetect

fungi metagenome

eukrep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets