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cellxgene-rest-api

moved to chanzuckerberg/cellxgene

chained-aws-lambda

chalice-app-template

An AWS Lambda serverless app template with Terraform deployment management

chamber

CLI for managing secrets

chanzuckerberg.r-universe.dev

Configuration for publishing to R-Universe

chart-releaser-action

A GitHub Action to turn a GitHub project into a self-hosted Helm chart repo, using helm/chart-releaser CLI tool

chemdisgene

Bio relation extraction labeled dataset

clusterfck

[UNMAINTAINED] K-means and hierarchical clustering

comp-tools-explorer

data visualization for exploring computational projects

concept_discovery

cpython

The Python programming language

crc-squared

light speed crc32c checksums

cryoet-data-portal

CryoET Data Portal

cz-pr-bot

A Github bot for streamlined PR reviews

czecs

CLI deployment tool for AWS Elastic Container Service

czge-test-data

data for czge integration tests

czgenepi

czi-bunny-public

Inspired by Facebook's bunnylol search engine.

czi-oss-training

Training Materials for Good Open Source Citizenship

czi-practice-git

czi-prosemirror

Rich Text Editor built with React and ProseMirror

czid-bact-resistance-pipeline

czid-bench

CZ ID infectious disease benchmarking tools

czid-cli

CZID (formerly IDseq) infectious disease command-line interface

czid-copy-tool

Utility for copying database reference files

czid-dag

Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.

czid-dedup

deduplicate FASTA and FASTQ files

czid-notebooks

Scripts for downstream analysis of IDseq data

czid-pipeline

Please see https://github.com/chanzuckerberg/idseq-workflows for the latest version of IDseq data processing software.

czid-qa

Custom tools to QA new releases of gsnap, rapsearch, STAR, or any other bioinformatics tool used in the IDseq pipeline.