cfn-softbio / scianalysis Goto Github PK
View Code? Open in Web Editor NEWSciAnalysis is a set of Python scripts for batch processing of image data, including x-ray scattering detector images.
License: Other
SciAnalysis is a set of Python scripts for batch processing of image data, including x-ray scattering detector images.
License: Other
It would be nice is SciAnalysis could be made into a package. I started a bit here:
https://github.com/CFN-softbio/SciAnalysis/tree/improved
It's fairly easy, just needs agreement. @0xzz
When using the new "run_parallel" method, the script will randomly hang and lockup the desktop environment. The errors are like:
Running tile_img for tile
Running tile_svg for tile
Running average_image for tile
Processing 100 infiles...
Queueing thumbnails for tile_x001_y004
Queueing thumbnails for tile_x001_y003
Queueing thumbnails for tile_x001_y001
Queueing thumbnails for tile_x001_y002
Queueing thumbnails for tile_x001_y005
XIO: fatal IO error 25 (Inappropriate ioctl for device) on X server ":0"
after 1202 requests (1202 known processed) with 90 events remaining.
XIO: fatal IO error 11 (Resource temporarily unavailable) on X server ":0"
after 1202 requests (1202 known processed) with 90 events remaining.
XIO: fatal IO error 25 (Inappropriate ioctl for device) on X server ":0"
after 1210 requests (1210 known processed) with 112 events remaining.
XIO: fatal IO error 11 (Resource temporarily unavailable) on X server ":0"
after 1202 requests (1202 known processed) with 90 events remaining.
XIO: fatal IO error 25 (Inappropriate ioctl for device) on X server ":0"
after 1202 requests (1202 known processed) with 90 events remaining.
While testing the software (runIm-BCP) I get the following console data:
Considering: ./ (2 subdirs, 3 files)
Considering: ./.idea (1 subdirs, 4 files)
Considering: ./.idea\inspectionProfiles (0 subdirs, 1 files)
Considering: ./data (1 subdirs, 7 files)
Running fft for C67 on Dow 55_q07
ERROR (ModuleNotFoundError) with file ./data\C67 on Dow 55_q07.jpg.
Process finished with exit code 0
Since there is no more information about which one is missing I consider it a bug. I got all packages listed in requirements installed.
Is there a specific reason why Examples are being left out?
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