ccipd / collageslicerextension Goto Github PK

I am trying to build this as an independent executable without using Slicer. I see it required ITK 4.6.1, but the cmake configuration for this version of ITK fails and I tried to use the latest version of ITK instead.

Now face the following errors:
Cannot open include file: 'itkPasteImageFilter.h': No such file or directory
Cannot open include file: 'itkRegionOfInterestImageFilter.h': No such file or directory
Cannot open include file: 'itkVectorIndexSelectionCastImageFilter': No such file or directory

I am currently using CMake 3.16 and the Visual Studio 14 2015 generator

CMakeLists.txt
CMakeLists.txt

Hi

I installed plug-in successfully but when using GUI, two Nifti Images (FLAIR, binary mask), the Slicer3D crashed ungraciously (i. e. just exited without error message). For that same reason I cannot give more detailed information.

System information:
OS Name Microsoft Windows 10 Enterprise
Version 10.0.17134 Build 17134
System Type x64-based PC

Slicer version: Slicer 4.10.0

very best regards
Harri M

Hello, I'm Yaewon Park.

1. Sorry for bugging you again and asking you questions..

After your help (thank you!) , I successfully installed COLIAGE extension in the 3D slicer program.

However, after executing the program with a T1C.nii.gz image file and an input ROI mask, there's still an error,

1. Input : Patientno_T1C.nii.gz (which is a normal nii.gz file, working well on other packages)
   Input mask: Patientno_T1C.nii.gz-label (ROI label file in 3D slicer)

Output image: Output image (creating new output image)
Radius: 5 (tried a few other radius such as 2 or 10)

After execution, there's an error message saying:

COLIAGE Texture Radiomics standard error:
PARSE ERROR:
One or more required arguments missing!

Brief USAGE:
For complete USAGE and HELP type:
C:/Program Files/Slicer 4.11.0-2018-11-02/bin../lib/Slicer-4.11/cli-modules/CLIMOdule_ColiageFilter.exe --help

-> How can I solve this problem? what is the reason of the error?
(Because I couldn't upload the capture file in this issue forum, I uploaded the caputure image showing the erro in another site and here's the link:

https://www.evernote.com/Home.action?login=true#n=b1bcbf51-06de-485f-8c3b-777f1c1a1f1a&s=s684&ses=4&sh=2&sds=5& )

Thank you again for your help. :D

2. Which is the optimized set for radius?
   I think there's probably no standard radius for radiomics texture analysis and you have to try multiple bins and compare the performance.
   Is this right? Or is there a optimized radius you recommend?

Hi,

I downloaded the slicerExtension_coliageFilter as a zip file.
The I use this procedure to install the extension (from step 2)
https://www.slicer.org/wiki/Documentation/Nightly/SlicerApplication/ExtensionsManager#Installing_an_extension_without_network_connection

But I have the following error error :
"No extension description found in archive '
.../Downloads/SlicerExtension_ColiageFilter.zip'"

Did I do something wrong?

Best,
Benjamin

ps: I have a MacOs (newest one) and the slicer version is 4.5.0-1 r24735

Hi,

Thank you for sharing code on GitHub. I have some problems when I tried to run the COLIAGE Texture in 3D Slicer and I'm wondering if you can help me solve them.

When I used the COLIAGE Texture Radiomic in 3D Slicer and clicked the "Apply". It came out the error that "HEAP CORRUPTION DETECTED: after Normal block (#316184) at 0x0000000002ADF710. CRT detected that the application wrote to memory after end of heap buffer." And in the 3D Slicer it shows "COLlAGE Texture Radiomics standard error: PARSE ERROR: One or more required arguments missing!"

I have checked about this kind of error and others said this kind of problem may cause by wrong code of indicator, so it leads to the error of memory.

I'm wondering if this problem only appears on my computer and could you please help me on how to solve the problem and run it normally, either checking your code or teaching me what to do.

Thanks a lot.

Best,
Wang

By the way, my system is Win7 and Slicer is 4.10.2.