ValueError: Length of values does not match length of index about solo HOT 7 CLOSED

>>> import anndata
>>> ad = anndata.read("../../../data/H0025_RV.cellbender_filtered.h5ad")
Variable names are not unique. To make them unique, call `.var_names_make_unique`.
>>> ad.X.sum(axis=1)
matrix([[79006.],
        [66248.],
        [54880.],
        ...,
        [  215.],
        [  236.],
        [  219.]], dtype=float32)
>>> sum(ad.X.sum(axis=1) > 0)
matrix([[14998]])
>>> sum(ad.X.sum(axis=1) ==  0)
matrix([[2]])

/var/spool/slurm/d/job10529374/slurm_script: 12: /var/spool/slurm/d/job10529374/slurm_script: source: not found
[2020-01-09 08:29:15,346] INFO - scvi._settings | Added StreamHandler with custom formatter to 'scvi' logger.
/home/nicholas/miniconda3/envs/solo/lib/python3.6/site-packages/sklearn/ensemble/weight_boosting.py:29: DeprecationWarning: numpy.core.umath_tests is an internal NumPy module and should not be imported. It will be removed in a future NumPy release.
  from numpy.core.umath_tests import inner1d
[2020-01-09 08:29:28,768] INFO - scvi._settings | 'scvi' logger already has a StreamHandler, set its level to 10.
Variable names are not unique. To make them unique, call `.var_names_make_unique`.
[2020-01-09 08:29:29,691] WARNING - scvi.dataset.dataset | This dataset has some empty cells, this might fail scVI inference.Data should be filtered with `my_dataset.filter_cells_by_count()
[2020-01-09 08:29:29,717] INFO - scvi.dataset.dataset | Remapping labels to [0,N]
[2020-01-09 08:29:29,717] INFO - scvi.dataset.dataset | Remapping batch_indices to [0,N]
[2020-01-09 08:29:29,773] INFO - scvi.dataset.dataset | Computing the library size for the new data
[2020-01-09 08:29:29,830] INFO - scvi.dataset.dataset | Downsampled from 15000 to 14998 cells
[2020-01-09 08:29:31,263] INFO - scvi.dataset.dataset | Computing the library size for the new data
[2020-01-09 08:29:38,866] DEBUG - scvi.inference.trainer |