Comments (5)
karinnav
commented on July 19, 2024
I'm having this same issue
from cellnet.
pcahan1
commented on July 19, 2024
Hi,
thank you for your interest in PACNet. Thank you for reporting this issue. I have updated the permissions on AWS, and these files should be accessible now. Please let me know if you have more questions or problems.
from cellnet.
karinnav
commented on July 19, 2024
Hello,
Thank you for your response. For some reason, the rda files in the PACNet
are still not accessible to me due to permission issues.
I've also tried to use the AWS version of Cell Net and I've had some issues
launching the instance ( CellNet_v_0.1.1 image (ami-2ab59855)). I've tried
to search for the ami, but I can't seem to find it. Has there been a
change in the ami number? Thank you
Best,
Karinna
…On Wed, Apr 12, 2023 at 3:41 PM Cahan Lab ***@***.***> wrote:
Hi,
thank you for your interest in PACNet. Thank you for reporting this issue.
I have updated the permissions on AWS, and these files should be accessible
now. Please let me know if you have more questions or problems.
—
Reply to this email directly, view it on GitHub
<#24 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AKFVMTZGR6DK55RLQ236T3LXA4VRXANCNFSM57OJQLPA>
.
You are receiving this because you commented.Message ID:
***@***.***>
--
Best,
Karinna Vivanco
UCSF-UC Berkeley Bioengineering Graduate Program
Lareau Lab, EBB Rm 520
(703) 975-9572
from cellnet.
larafeulner
commented on July 19, 2024
I have also been unable to find the AMI (in N. Virginia but checked all four US regions in case) and would appreciate any assistance, thanks!
ETA - I believe I'll need to train a new cell type for this analysis (requiring steps 13-21 of the procedure) so unsure if I'd be able to use the web app in this case.
from cellnet.
bali-eng
commented on July 19, 2024
Hi @larafeulner , @karinnav and @zyb1984
You can download the data from your terminal.
First copy the s3 URL (click on Copy S3 URL on the top) and use the following comment to download it .
aws s3 cp s3_url . (make sure you have the dot "." at the end).
If you get an error make sure you install aws cli and set its configuration
from cellnet.
Related Issues (20)
- cn_salmon Error: cannot open compressed file 'geneToTrans_Homo_sapiens.GRCh38.80.exo_Jul_04_2015.R' HOT 5
- Problem running cn_make_processor HOT 4
- Error in "cn_make_grn" HOT 1
- Example on running locally HOT 1
- cn_salmon HOT 1
- Question: NIS scores for single cell data
- Origin of TF list for Homo sapiens HOT 1
- cn_apply() Error in predict.randomForest HOT 4
- Error at step 8 of the PROCEDURE HOT 1
- Error while running cn_barplot_grnSing
- Beg you to help us reconstruct GRNs HOT 1
- interpreting NIS plot HOT 2
- cn_apply: does not match
- STEP 6: Error in geneIndexList[[i]] : subscript out of bounds
- Unused argument in cn_salmon HOT 2
- Human training data HOT 2
- cn_salmon error HOT 1
- cn_salmon Error:arguments implying differing number of rows HOT 8
- Using CellNet downstream of salmon HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cellnet.