Comments (1)
We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis of many state-of-the-art differentiation protocols, so that you can benchmark your results against those commonly used methds:
https://cahanlab.org/resources/agnosticCellNet_web/
from cellnet.
Related Issues (20)
- cn_salmon Error: cannot open compressed file 'geneToTrans_Homo_sapiens.GRCh38.80.exo_Jul_04_2015.R' HOT 5
- Problem running cn_make_processor HOT 4
- Error in "cn_make_grn" HOT 1
- Example on running locally HOT 1
- Question: NIS scores for single cell data
- Origin of TF list for Homo sapiens HOT 1
- cn_apply() Error in predict.randomForest HOT 4
- Error at step 8 of the PROCEDURE HOT 1
- Error while running cn_barplot_grnSing
- Beg you to help us reconstruct GRNs HOT 1
- interpreting NIS plot HOT 2
- Can't download the reference example HOT 5
- cn_apply: does not match
- STEP 6: Error in geneIndexList[[i]] : subscript out of bounds
- Unused argument in cn_salmon HOT 2
- Human training data HOT 2
- cn_salmon error HOT 1
- cn_salmon Error:arguments implying differing number of rows HOT 8
- Using CellNet downstream of salmon HOT 4
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from cellnet.