pathway_errorbar(): "Error in guide_train.prism_offset_minor" when ggprism loaded about ggpicrust2 HOT 3 CLOSED

Hello,

Thank you for reaching out and sharing your findings regarding the issue you encountered with our package. As the developer, I appreciate your effort in troubleshooting and finding a possible solution.

I will make sure to add this information to our package's Q&A repository, so that other users who might run into similar issues in the future can find a solution more easily. Thank you for bringing this to our attention.

Once again, if you have any further questions or concerns, please don't hesitate to reach out. We are always looking for ways to improve our package and provide a better user experience.

Best regards,

Chen YANG

from ggpicrust2.

Quick note that I added the following code above pathway_errorbar() just in case the group had the be hard coded as an object:

Group <- metadata$genotype

pathway_errorbar(
    abundance = ko_abundance,
    daa_results_df = daa_annotated_sub_method_results_df_filtered,
    Group = Group,
    p_values_threshold = 0.05,
    order = "group",
    select = NULL,
    ko_to_kegg = FALSE,
    p_value_bar = TRUE,
    colors = NULL,
    x_lab = "description"
  )

And now I get the following error:
"Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
polygon edge not found"

Progress?

from ggpicrust2.

Possibly found the issue, though I'll leave this open until you have a chance to verify.

I think it was related to me not having some required fonts installed. I followed the steps suggested on this stackoverflow thread:
https://stackoverflow.com/questions/71362738/r-error-in-grid-callc-textbounds-as-graphicsannotxlabel-xx-xy-polygo

And now I can generate the barplots! If you agree that missing fonts might have been the issue, then it might be good to require them when the package installs.

from ggpicrust2.