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arc

augur

Pipeline components for real-time phylodynamic analysis

auspice

Web app for visualizing pathogen evolution

bacterial-genome-reconstruction

bacterial-genome-synchronizer

beacon-query-test

test of GA4GH Beacon v2 queries

beegfs_testbed

bento_provisioning

bw-merge-window

Command-line utility for merging a window of a set of bigWigs, inspired by the previous C3G bigWigMergePlus tool.

c3g.github.io

C3G pages at: https://c3g.github.io/

ccv_api

chord_authorization_service

Authorization service for the CHORD platform

chord_docs

Centralized documentation for the CHORD project.

chord_example_service

Example data microservice for the CHORD project.

chord_project_service

Project and dataset ownership management service for the CHORD project.

chord_rnaget

RNAGet service for the CHORD project

chord_singularity

Singularity container scripts for a complete CHORD project package.

cineca

Scripts to wrangle CINECA data into the Bento Platform

colocalization-browser

connect-sqlite3

SQLite3 session store for connect and express.

covseq_mcgill

McGill SARS-CoV2 Documentation

covseq_tools

Scripts for SARS-CoV-2 analysis with GenPipes

cromwell_on_cc_slurm

cromwell config and setup for compute canada systems

d-path

dnaseq

Genpipes DNAseq variant calling pipeline implemented in Nextflow

elastic-hpc

epivar-browser

Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.

fhir-synthetic-datasets

freezeman

Freezer management & sample tracking system

freezeman_server

A freezer management and sample tracking system for C3G