See data/ReadMe.md for information on raw data.
See https://data-viz.it.wisc.edu/FounderDietStudy/ app (limited access) for interactive data tool. More information found on Shared Google Drive (limited invitations).
- https://data-viz.it.wisc.edu/FounderDietStudy/: interactive app on RStudio Connect
- app.R: code for app
- foundrDietStudy.R: support code for app
- https://github.com/byandell/foundr: support package for app
- FounderDietStudy_Data.Rmd: Harmonize raw data for further analysis.
- FounderDietStudy.Rmd: initial study of founder diet study
- FounderDietStudy_cor.Rmd: correlation study across founders
- FounderDietExplore.Rmd
Data are archived in ResearchDrive with access via Attie Lab. They include the following:
- RawData
- Data collated by Mark Keller. Much copied from Founder diet data Google Drive.
- HarmonizedData
- Beginnings of harmonized data developed by Brian Yandell.
Brian S. Yandell [email protected] 30 January 2023
4 Sep 2024
Founder apps are in transition to new foundr/foundrShiny
configuration.
As of today, all 3 default connect apps (/Founder*Study
) have the new
configuration, using the foundrBase
branch.
Apps /OldFounder*Study
use the v1.4
branch of foundr
package,
which is frozen.
Apps /OrigFounder*Study
use the main
branch of foundr
package,
and will break when the foundrBase
branch is merged back into main
.
- https://connect.doit.wisc.edu/FounderLiverDietStudy/
./deployLiverNew
1.5.0 9/4/24- connect name
deployLiverNew
- uses
foundr
branch "foundrBase"
- https://connect.doit.wisc.edu/OldFounderLiverDietStudy/
./deployLiver
1.4.1 9/4/24- connect name
deployLiver
- old version
- uses static
foundr
branch v1.4
- https://connect.doit.wisc.edu/OrigFounderLiverDietStudy/
./deployLiver
1.4.1 9/4/24- connect name
deployLiver
- older version that will die when "foundrBase" is merged
- https://connect.doit.wisc.edu/WorkFounderLiverDietStudy/
- https://workbench.doit.wisc.edu directory
./data/deployLiver
- workbench name
shinyApp_Liver
6/7/24 - has liver data but is somehow messed up
- named
Founder Diet Study
- uses
foundrShiny
butfoundr
v1.4
- named
- https://workbench.doit.wisc.edu directory
- https://connect.doit.wisc.edu/FounderDietStudy/
./deployNew
1.5.0 9/4/24- connect name
deployNew
- uses
foundr
branch "foundrBase"
- https://connect.doit.wisc.edu/OldFounderDietStudy/
./deploy
1.4.1 9/4/24- connect name
deploy
- old version
- uses static
foundr
branch v1.4
- https://connect.doit.wisc.edu/OrigFounderDietStudy/
./deploy
1.4.1 5/9/24- connect name
deploy
- older version that will die when "foundrBase" is merged
- https://connect.doit.wisc.edu/FounderCalciumStudy/
./deployCalcium
1.5.0 9/4/24- connect name
deployCalcium
- uses
foundr
branch "foundrBase"
- https://connect.doit.wisc.edu/OldFounderCalciumStudy/
./deployCalcium
1.4.1 5/9/24- connect name
deployCalcium
- older version that will die when "foundrBase" is merged