Comments (5)
Hi @kguion1 May I know the version of tangram you are using?
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tangram-sc 0.4.0 pypi_0 pypi
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@kguion1 the current version of Tangram is 1.0.3 and all the tutorials work best with this version of Tangram.
The 'plot_cell_annotation_sc' is a new function added in the recent versions. Thank you for using Tangram!
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okay! I was using the 0.4.0 because of the link to this yaml so might be worth updating: https://github.com/scverse/squidpy_notebooks/blob/main/envs/tangram_environment.yml in one of the tutorials.
Thanks so much for your help :)
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Hi, after updating to the new version, now it cannot find the pp_adatas
function. My tangram-sc package is version 1.0.3
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Related Issues (20)
- Can we have an API as batch size for the integration method? HOT 3
- No attribute 'pp_adatas' in tangram HOT 2
- Possible to use multiple single cell datasets in Tangram? HOT 3
- Cannot find correspondence of the input data HOT 1
- question about training genes HOT 1
- Some questions about best practices HOT 1
- Attribute error : module 'tangram' has no attribute 'map_cells_to_space' HOT 2
- scRNAseq cells < spatial cells, curious about how mapping works HOT 3
- Unexpected behaviour HOT 1
- Question about acceptable AUC, improving AUC HOT 1
- potential overfitting HOT 5
- Interpretation of tangram_ct_pred HOT 2
- Option "enforce gene lowercase" HOT 1
- error when sq.im.segment
- Tangram Deconvolution HOT 1
- Using Integrated single cell data for alignment
- AttributeError: module 'tangram' has no attribute 'pp_adatas'
- Sparsity_sc and sparsity_sp = 0
- Please explain `project_cell_annotations`
- Projecting spatial annotations to single cell HOT 2
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