Comments (4)
alisterburt
commented on July 30, 2024
not sure what you're referring to with this, do you mean the update of the convention in alisterburt/eulerangles?
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brisvag
commented on July 30, 2024
No, I'm referring to the fact that the new starfile format spits out multple dataframe. Or have I misunderstood?
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alisterburt
commented on July 30, 2024
ahhh gotcha!
Yes these are RELION 3.1+ STAR files with optics group information at the beginning.
We definitely need to be able to gracefully handle both cases, ideally without a user having to know about the existence of an alternative format from the one they have (i.e. let's try not to require a flag)
One additional piece of useful info is the pixel size is in the optics group information!! as well as the number of pixels in the box for each particle. We could use the pixel size info to move towards some rescaling functionality (#19)
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brisvag
commented on July 30, 2024
closed by #48 .
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Related Issues (20)
- Use dask HOT 5
- failed reading of star file HOT 1
- Images HOT 3
- Dependency issues HOT 2
- Failed to load mrc HOT 9
- saving files should add extension if needed
- saving star file does not save pixel size correctly HOT 1
- issue with star file reading? HOT 7
- reducing coordinate opacity makes black dots on the image layer HOT 12
- Generating the same particle twice overrides the existing layer but with broken orientations HOT 2
- Minor issue: expected MRC file extension HOT 1
- Suggestion: show tomograms in the same orientation as IMOD HOT 3
- out of slice fading of point and orientation layer HOT 2
- colouring points by data attribute HOT 4
- install error using Napari GUI HOT 7
- gaussian filter has no "Run" button HOT 2
- Convert meshblock to a multiblock HOT 1
- Clean up non-visualization code
- Import times are SLOW HOT 3
- Documentation
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