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rdrighetto avatar rdrighetto commented on September 5, 2024 1

Hi Lorenzo, thanks a lot for the clarifications and the snippet!
If you manage to include this option it would be awesome, but it's not urgent. It's no big deal as long as everything is consistent :-)

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brisvag avatar brisvag commented on September 5, 2024

The flip is in Y, and that's because napari has the origin at the top left like most graphics programs, instead of swapping it to the bottom left like IMOD and Co do.

While it's easy to do the flip, it's a bit trickier for annotations because we'd have to flip coordinates, accounting for different scales and shifts of the origin if any. Should be doable, I just need to be careful :P I'll play around with it and see if it makes sense.

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brisvag avatar brisvag commented on September 5, 2024

FYI if it's just for visualisation and you need it to work now, you can just do:

layer.data = layer.data[:, ::-1]

to flip it.

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