Name: Brian O'Connor
Type: User
Company: Broad Institute & Nimbus Informatics, LLC
Bio: PI in the Data Sciences Platform at the Broad Institute focused on bioinformatics cloud infrastructure development and interoperability.
Twitter: boconnor
Location: San Jose, CA
Blog: https://github.com/briandoconnor
Brian O'Connor's Projects
Production repository for the all-new Advantage360 Professional using ZMK engine
A Mac tool that finds available delivery slots for Amazon's Whole Foods delivery and Amazon Fresh services
Docker containers for Anvil Project
example downloading WDL for EGA
Example repo for the blog post on docker local development environments
A repo for the Dockerfile, WDL, and script to check that GTEx files have the correct checksum
Collections API prototype based on AWS in Action: API Gateway
Cloud object-based storage system for ICGC data
Dockerfile for Alignment
a repo for the bamstat tool for the 2018 class
this is for a demo!
A repo for the BAMStats command, used as the tutorial for Dockstore
A very simple tool that just performs an md5sum
Dockerized Synapse Python client & CWL for Dockstore
AngularJS UI for the Dockstore Web Service.
A repo for the alignment workflow in the class
for the class!
Used for the GA4GH/Dream Infrastructure Challenge
Realize the search partial for dockstore
Serverless Examples – A collection of boilerplates and examples of serverless architectures built with the Serverless Framework and AWS Lambda
Files for putting fastqc in Dockstore
Workflows used for germline short variant discovery in WGS data