Comments (4)
Yes, you are right. The window size and track display modes didn't fit. I fixed it injecting java script: --js "for (i = 0; i < 2; i++) {options.tracks[i].autoHeight = true } "
Thank you for your help!
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hi, what type of annotation track are you trying to show? if you send a bed file it will show it.
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I'd like to show a track containing RefSeq Genes. They are visible by default in IGV.
EDIT: when I supply a bed file containing RefSeq genes something strange happens: I see two new tracks instead of one and only one of them contains RefSeg genes (attachment)
I run jigv with the following command:
jigv tfile1.bam#recalibrated file2.bam#allcontigs genes.bed
from jigv.
the refseq genes is displayed by default, you don't need the bed file. perhaps you just didn't see it before you added the other bed file?
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Related Issues (18)
- list of regions to iterate through HOT 3
- Read sequence is "*" HOT 1
- Windows build HOT 1
- Add bed-format file to sites option?
- Provide small example output HOT 2
- parameter usage for RNA sequencing samples HOT 2
- can this tools generate a file contains each variant of RF and FR number of base A T C G N HOT 2
- Custom Template HOT 1
- IDEA: seeing reads for more than one sample without pedigree file HOT 4
- jigv settings for targeted deep sequencing HOT 4
- automatic taking images given list of regions HOT 1
- show SAM flag on click of alignment
- customization
- sort by base HOT 3
- Should print help when no input provided? HOT 1
- Security: users with access to the same server can see each others sessions HOT 2
- Feature request: find read by name and highlight/color specific read(s) HOT 2
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