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Comments (4)

wojciech-galan avatar wojciech-galan commented on June 14, 2024 1

Yes, you are right. The window size and track display modes didn't fit. I fixed it injecting java script: --js "for (i = 0; i < 2; i++) {options.tracks[i].autoHeight = true } "
Thank you for your help!

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brentp avatar brentp commented on June 14, 2024

hi, what type of annotation track are you trying to show? if you send a bed file it will show it.

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wojciech-galan avatar wojciech-galan commented on June 14, 2024

I'd like to show a track containing RefSeq Genes. They are visible by default in IGV.
EDIT: when I supply a bed file containing RefSeq genes something strange happens: I see two new tracks instead of one and only one of them contains RefSeg genes (attachment)
I run jigv with the following command:
jigv tfile1.bam#recalibrated file2.bam#allcontigs genes.bed
chr9-36217031-36218031

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brentp avatar brentp commented on June 14, 2024

the refseq genes is displayed by default, you don't need the bed file. perhaps you just didn't see it before you added the other bed file?

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