Comments (4)
I think Iām in favour of keeping the files hidden, and providing tools to allow users to inspect the atlases.
My issue with making them visible is that it could be very easy for an inexperienced user to accidentally edit a json file, rendering the whole atlas unusable.
My feeling is that users who know enough to explore a hidden directory, know enough to not play with them.
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and if they want to save to a non-hidden folder they can do so with the tools provided
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My issue with making them visible is that it could be very easy for an inexperienced user to accidentally edit a json file, rendering the whole atlas unusable.
Ok, this sounds like a good point! I was raising it just because I was trying to load an atlas from the bgviewer and the hidden folder was not shown by the pyqt5 file dialog window. But I guess that eventually this should be handled with a dropdown manu using Fede new atlas listing functionalities?
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I was raising it just because I was trying to load an atlas from the bgviewer and the hidden folder was not shown by the pyqt5 file dialog window
I think you can change this, according to this post:
fdlg = QtWidgets.QFileDialog()
fdlg.setFilter(QDir.AllEntries | QDir.Hidden)
if (fdlg.exec()):
fileNames = fdlg.selectedFiles()
fdlg.close()
But I guess that eventually this should be handled with a dropdown manu using Fede new atlas listing functionalities
I think this is the way forward.
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Related Issues (20)
- [BUG] the link to documentation in your github description is broken HOT 1
- [Feature] Are there plans for developing an online version of BrainGlobe-atlasapi? HOT 3
- [BUG] Hemisphere map not correctly set for mpin_zfish_1um_v1.0 HOT 2
- [Feature] Add Ambystoma mexicanum (axolotl) atlas
- Decide what to do with `atlas_generation/main_script` HOT 1
- deal with local and remote atlas versions in validate_atlases.py HOT 9
- validate_atlases.py additional_references error HOT 5
- Add updated version of the kim atlas HOT 1
- [Feature] flexibly generate atlases with different resolutions
- perens_atlas alignment trouble with new version [BUG] HOT 4
- perens_lsfm_mouse_20um_v1.1 is oriented incorrectly HOT 1
- Use pooch to download data
- User is informed (twice) that the atlas is not the latest when they're updating it
- The warning that an atlas is not the latest is missing a space
- Standardise the axial resolution of the allen spinal cord atlas HOT 1
- Save atlases to `.brainglobe/atlases`
- Atlases should be returned by `brainglobe list` in alphabetical order
- Enforce standardised orientation
- Atlas resolution as an attribute, not a name.
- Move atlas generation code out of the `brainglobe-atlasapi` package
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