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small-rna's Introduction

small-rna

This repository contains the Biowdl workflows usable for processing small RNA data (20-60bp reads). This pipeline will perform QC (including adapter clipping), mapping and and expression quantification.

Documentation

You can find the documentation here.

About

This pipeline is part of Biowdl, developed by the SASC team at Leiden University Medical Center.

Contact

For any question related to small-rna, please use the github issue tracker or contact the SASC team directly at: [email protected].

small-rna's People

Contributors

rhpvorderman avatar davycats avatar hmei avatar hailiangmei avatar

Watchers

James Cloos avatar

small-rna's Issues

release 1.1.0

Release checklist

  • Check outstanding issues on JIRA and Github
  • Publish documentation (updateDocs.sh) from develop branch
    • Copy docs folder to gh-pages branch
    • Overwrite existing develop folder with docs folder on gh-pages
    • Push changes to gh-pages branch
  • Check latest documentation
     looks fine
  • Change current development version in CHANGELOG.md to stable version.
  • Run the release script release.sh
    • Check all submodules are tagged
    • Merge the develop branch into master
    • Created an annotated tag with the stable version number. Include changes
      from changelog.md.
    • Confirm or set stable version to be used for tagging
    • Push tag to remote.
    • Merge master branch back into develop.
    • Add updated version number to develop
  • Publish documentation (updateDocs.sh) from master branch
    • Copy docs folder to gh-pages branch
    • Rename docs to new stable version on gh-pages
    • Set latest version to new version
    • Push changes to gh-pages branch
  • Create a new release from the pushed tag on github

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