biomathcode / rosalind-solutions Goto Github PK

ROSALIND is a platform for learning bioinformatics and programming through problem solving. Here are my solutions for these problems.

website: http://rosalind.info

my accounts: http://rosalind.info/users/huihui0228/

problems & solutions:

• DNA: Counting DNA Nucleotides [info] [code]
• RNA: Transcribing DNA into RNA [info] [code]
• REVC: Complementing a Strand of DNA [info] [code]
• FIB: Rabbits and Recurrence Relations [info] [code]
• GC: Computing GC Content [info] [code]
• HAMM: Counting Point Mutations [info] [code]
• IPRB: Mendel's First Law [info] [code]
• PROT: Translating RNA into Protein [info] [code]
• SUBS: Finding a Motif in DNA [info] [code]
• CONS: Consensus and Profile [info] [code]
• FIBD: Mortal Fibonacci Rabbits [info] [code]
• GRPH: Overlap Graphs [info] [code]
• IEV: Calculating Expected Offspring [info] [code]
• LCSM: Finding a Shared Motif [info] [code]
• LIA: Independent Alleles [info] [code]
• MPRT: Finding a Protein Motif [info] [code]
• MRNA: Inferring mRNA from Protein [info] [code]
• ORF: Open Reading Frames [info] [code]
• PERM: Enumerating Gene Orders [info] [code]
• PRTM: Calculating Protein Mass [info] [code]
• REVP: Locating Restriction Sites [info] [code]
• SPLC: RNA Splicing [info] [code]
• LEXF: Enumerating k-mers Lexicographically [info] [code]
• LGIS: Longest Increasing Subsequence [info] [code]
• LONG: Genome Assembly as Shortest Superstring [info] [code]
• PMCH: Perfect Matchings and RNA Secondary Structures [info] [code]
• PPER: Partial Permutations [info] [code]
• PROB: Introduction to Random Strings [info] [code]
• SIGN: Enumerating Oriented Gene Orderings [info] [code]
• SSEQ: Finding a Spliced Motif [info] [code]
• TRAN: Transitions and Transversions [info] [code]
• TREE: Completing a Tree [info] [code]
• CORR: Error Correction in Reads [info] [code]
• INOD: Counting Phylogenetic Ancestors [info] [code]
• KMER: k-Mer Composition [info] [code]
• KMP: Speeding Up Motif Finding [info] [code]
• LEXV: Ordering Strings of Varying Length Lexicographically [info] [code]
• MMCH: Maximum Matchings and RNA Secondary Structures [info] [code]
• PDST: Creating a Distance Matrix [info] [code]
• RSTR: Matching Random Motifs [info] [code]
• SSET: Counting Subsets [info] [code]
• EVAL: Expected Number of Restriction Sites [info] [code]
• NWCK: Distances in Trees [info] [code]
• SETO: Introduction to Set Operations [info] [code]
• DBRU: Constructing a De Bruijn Graphs [info] [code]
• ASPC: Introduction to Alternative Splicing [info] [code]
• CAT: Catalan Numbers and RNA Secondary Structures [info] [code]
• MOTZ: Motzkin Numbers and RNA Secondary Structures [info] [code]
• RNAS: Wobble Bonding and RNA Secondary Structures [info] [code]
• REAR: Reversal Distance [info] [code]
• SORT: Sorting by Reversals [info] [code]
• SPEC: Inferring Protein from Spectrum [info] [code]
• CONV: Comparing Spectra with the Spectral Convolution [info] [code]
• PRSM: Matching a Spectrum to a Protein [info] [code]
• FULL: Inferring Peptide from Full Spectrum [info] [code]
• SGRA: Using the Spectrum Graph to Infer Peptides [info] [code]