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rad-seq's Introduction

RAD-seq analysis

Scripts for software install, assembly, and analysis of RAD-seq data

ipyrad

Complete software documentation here

  • ipyrad_install.txt: code for ipyrad software installation
    • customized for JetStream BioLinux instances
    • installs Miniconda, ipyrad, and dependencies
  • The following scripts set up project directories, download data, and assemble data using ipyrad:
    • ipyrad_tutorial.sh: script for introductory tutorial using simulated data
    • ipyrad_hibiscus.sh: script for assembly of three empirical samples

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