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biojulia.github.io's Introduction

BioJulia.dev

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Development

Building the site

The project devcontainer can be used. Check out Get started with development Containers in Visual Studio Code if you're not familar with devcontainers.

Otherwise you can quickly build the site with the following commands:

julia> using Pkg; Pkg.instantiate(); Pkg.precompile();
julia> using Xranklin; Xranklin.serve();

The LiveServer will begin listening on http://localhost:8000/ !

CSS

Any changes to the CSS should be made to the SCSS files in _sass/ and compiled using Sass.jl as follows:

Sass.compile_file("style.scss", "../_css/celeste.min.css"; output_style = Sass.compressed)

All the Franklin.jl related changes are in _sass/adjust.scss

Static Site Tech

Using Xranklin under the hood.

Celeste Template

Based on the wonderful Celeste by @nicoelayda.

biojulia.github.io's People

Contributors

edmundmiller avatar jakobnissen avatar jgreener64 avatar kescobo avatar viralbshah avatar

Stargazers

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Watchers

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Forkers

transgirlcodes jgreener64 stjordanis jakobnissen edmundmiller

biojulia.github.io's Issues

Verify the "biojulia.net" domain with the "BioJulia" GitHub organization

I notice that currently, the biojulia.net domain is not verified with the "BioJulia" GitHub organization.

Verifying the domain will add a green "Verified" badge on https://github.com/BioJulia, which may help increase people's level of perceived trust in the BioJulia GitHub organization.

The process is straightforward: https://help.github.com/en/github/setting-up-and-managing-organizations-and-teams/verifying-your-organizations-domain

Would it be possible to verify the biojulia.net domain?

cc: @benjward

Domain name expired

Dear @SabrinaJaye

Not sure how else I could message you. The BioJulia domain (biojulia.net) has expired. Let's get it up before domain squatters get it. Can you renew it, or preferrably extend ownership to me and/or Kevin Bonham so we can maintain it?

Missing blog posts

The old BioJulia blog had at least three blog posts:

  1. The comparison between Seq and BioJulia
  2. An introduciton to Automa
  3. What scientists should know about hardware to write fast code

Post 1 should be included on the new website because I like it.
Post 2 is just a worse version of the v1 Automa documentation - so let's just not upload that.
Post 3 is an outdated version of https://viralinstruction.com/posts/hardware/ - I'm fine with linking to that page to restore the post, but I don't think it's really about BioJulia as such.

Anyway, post 1 should be restored.

Convert to Franklin.jl?

This would be a bit of a heavy lift, I think, but it might be worth converting to a Franklin.jl site, so that we can do everything in julia. And @tlienart tends to be super helpful working out bugs.

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