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arc

Improving de novo assembly based on reads classification

bedtools2

bedtools - the swiss army knife for genome arithmetic

boss

A new algorithm for scaffolding

brwmdi

BRWMDI is a computational method to identify potential microbe-disease interactions.

chiapop

ChIAPoP: A integrated tool for ChIA-PET data analysis

clrs

📚 Solutions to Introduction to Algorithms Third Edition

cmldr

A novel drug repositioning computational method

deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

dmfcda

Deep matrix factorization improves prediction of human circRNA-disease associations

epga

De Novo Assembler

epga-sc

EPGA-SC : A framework for de novo assembly of single-cell sequencing reads

epga2

A New Assembler

epga2.1

New version about EPGA2

fithichip

Statistically Significant loops from HiChIP data

gapreduce

Gap Filling Tool

get

Gap-filling Evaluation Tool

gmclda

hexo-autolinker

Automatic link generation in Hexo posts

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

ilsls

A Novel Scaffolding Algorithm Based on Contig Error Correction and Path Extension

isea

looppredictor

LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model

mac

Merging assemblies by using adjacency algebraic model and classification

mbirw

mec

Contig Misassembly Correction

multiguidescan

a multi-processing tool for designing CRISPR guide RNA library

multimotifmaker

A multi-thread tool for identifying DNA methylation motifs from Pacbio reads

netl_ddi

pe-trimmer

An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data

pesm

PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences