bioinfo-biols / ciri-vis Goto Github PK

Dear Sir,

If I have 10 samples (5 vs 5), should I combine all the circRNA ID into list.txt?

Dear Sir,

Thanks for coming out with CIRI-vis. But recently when I try to apply it on my result, it skipped one of my circRNA and proceed with the next circRNA, stating it may have problems. The picture of error is as below.

Since the required file for CIRI-vis is the .anno file from CIRI-full merge module. I have check it and it does have the result for the chr6:99377386|99383824 circRNA. The picture below is a screenshot of the result in the .anno file.

I also tried googling the error "java.lang.ArrayIndexOutOfBoundsException: 10", but I can't manage to determine the root of the problem. So may I ask, what potentially causes this problem? And how should I fix it.

Thank you very much for your time.

Kai Shen

Hi!

I wonder is there a package to visualize ciri_quant detected circles? Where it will show exon coverage, BSJ and FSJ read counts?

Thank you