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signalanalysis2020.2

Repository for ICE1011, an undergraduate and graduate course on signal analysis for neuroscience

sjtu-10th-cns-winter-school

Tutorial repo for 10th computational neuroscience winter school @LCNS-SJTU.

sjtu-11th-cns-winter-school

Tutorial repo for 11th computational neuroscience winter school @LCNS-SJTU.

sleep-stage-transition

Code to replicate results for sleep stages transitions in small network. Reference: Cellular and neurochemical basis of sleep stages in the thalamocortical network eLife 5:e18607. https://doi.org/10.7554/eLife.18607

sleep-sws-stimulation

Code to replicate results for experiments with stimulation during slow oscillations in small thalamocortical network. Reference: Stimulation Augments Spike Sequence Replay and Memory Consolidation during Slow-Wave Sleep. https://www.jneurosci.org/content/40/4/811.

sleepinfomax

sleeposcillations_ieeg

This toolbox was designed for detecting spindles and slow waves in iEEG data recorded from epileptic patients.

sleepreplayconsolidation

Repository for Nature Communications paper entitled "Sleep-like Unsupervised Replay Reduces Catastrophic Forgetting in Artificial Neural Networks"

sleepscoringieeg

sleep scoring based on intracranial recordings

sleep_oscillation_detection

Sleep Oscillations Detection codes

somatosensoryssa_model

Code and data for the paper Han et al 2022

spikebench

spikebench is an open spike train time-series classification benchmark

spikeship

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

spirit3publicrepo

Code for Golden, R., Delanois, J. E., Sanda, P., & Bazhenov, M. (2022). Sleep prevents catastrophic forgetting in spiking neural networks by forming a joint synaptic weight representation. PLOS Computational Biology, 18(11), e1010628.

stochastic-resonance

Emergence of stochastic resonance in a two-compartment hippocampal pyramidal neuron model

thalamocortical2

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2

tvbadex_parsweep

Repository used to write functions, studies and scripts to run and analyze results of parameter sweeps of TVB-AdEx. Also functional connectivity of the DMN in TVB-AdEx

uncertainpy

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.

upstateestimation

Detect Up state duration based on its spike train.

watsonlabcode

weber_ieeg_natcommun

yasa

YASA (Yet Another Spindle Algorithm): a Python package to analyze polysomnographic sleep recordings.