bikmi Goto Github PK
Name: Zhang Ruyi
Type: User
Company: Fudan university
Bio: Ph.D. of School of life science, Fudan University, and major in microbiology and bioinfomatics.
Location: Shanghai Yangpu District
Name: Zhang Ruyi
Type: User
Company: Fudan university
Bio: Ph.D. of School of life science, Fudan University, and major in microbiology and bioinfomatics.
Location: Shanghai Yangpu District
Statistics and visualization for amplicon data
Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
Biopython Tutorial Chinese Translation
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A single molecule sequence assembler for genomes large and small.
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Classifier for metagenomic sequences
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DAS Tool
DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
Rapid comparison and dereplication of genomes
Fast genome-wide functional annotation through orthology assignment
De novo assembler for single molecule sequencing reads using repeat graphs
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
More scalable dereplication for metagenome assembled genomes
data analysis for ammonia oxdizers in intertidal sediments
A fast multi-threaded k-mer counter
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
Phasing for metagenomics using PacBio long reads
A scalable high-throughput metabolic and biogeochemical functional trait profiler
Horizontal gene transfer (HGT) identification pipeline
Taxonomical and Functional Profiling for Shotgun Metagenomic Sequencing
Interpretation and visualization of microbiome charts
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
MMseqs2: ultra fast and sensitive search and clustering suite
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.