bgruening Goto Github PK
Name: Björn Grüning
Type: User
Company: University of Freiburg
Location: Freiburg (Germany)
Björn Grüning's Projects
docker-galaxy-ngs-preprocessing
:whale::bar_chart::books: Docker Images for NGS data preprocessing
docker-galaxy-phylogenetics
:whale::bar_chart::books: Docker Images for molecular phylogenetics
docker-galaxy-ploen
Special Galaxy Docker Image for the MPI for Evolutionary Biology
docker-galaxy-protease-prediction
Docker Image for protease predictions based on cleavage sites
docker-galaxy-sequence-tools
Galaxy flavor with a basic set of sequence manipulation tools
docker-galaxy-stable
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-ipython-notebook
:whale: :microscope: :books: IPython running in a docker container. This image can be used to integrate IPython into Galaxy
docker-jupyter-notebook
:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy
docker-minknow
Docker container that can be used to run a local MinKNOW
docker-odv
Docker image for ODV
docker-panoply
Docker container for running panoply netCDF, HDF and GRIB data viewer
docker-paraviewweb
:whale: ParaViewWeb running in a docker container. This image can be used to integrate ParaViewWeb into Galaxy
docker-phyloseq
Dockerized deployment of the shiny-phyloseq app
docker-recipes
:whale: Dockerfiles to build Galaxy images
docker-rstudio-notebook
RStudio as a Galaxy Interactive Environment
docker-stacks
Opinionated stacks of ready-to-run Jupyter applications in Docker.
docker-usegalaxy
:whale: Galaxy Docker repository with tools from usegalaxy.org (UseGalaxy.org flavour)
dockeri.co
Badges for Docker
documentation
Sphinx-based documentation for the Open Babel project
download_store
universal storage
dunovo
Reference-free duplex sequencing pipeline.
edamontology
EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
eden
Python Explicit Decomposition with Neighborhoods
ena-upload-container
This is a repository to build a Galaxy container to upload raw reads to ENA
example_zarr
example OME-ZARR
fancyselector
Select replacement, but fancy!
fasrc-galaxy
Galaxy app in a container
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
fe-ft-esg
Repository for collaborative work between Fair-Ease and EuroScinceGateway projects
featurecounts_galaxy_wrapper
featureCounts Galaxy Wrapper
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