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matlab_mysql

Tools for connecting to mySQL databases from Matlab

modules

Python modules used in several applications

mouseconnectomegenes

Core code to reproduce analyses in the Fulcher & Fornito (2016) paper in PNAS

mousefeatures

Simple time-series features for applying to mouse voxels

mousegradients

Code to reproduce analyses of mouse cortical gradients

mousestructuralconnectivity

Code for computing interareal axonal connectivity in mouse

networkbenchmarks

neuroexpressoanalysis

Pre-print at: http://biorxiv.org/content/early/2016/11/26/089219

nftsim

C++ library for simulation of multiscale neural field dynamics

nitime

Timeseries analysis for neuroscience data

nonlinearity_measure

Matlab code for the nonlinearity measure L through nsAMDF (nonlinear average magnitude difference function)

psytutorial

pub

Main analysis from thesis for publication

pyopy

Python bindings to interesting matlab libraries for data analysis

researchresources

Resources for reseachers

rs-fmri

Code for processing and analysis of resting state fMRI

spin-test

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of human brain structure and function," Alexander-Bloch et al., NeuroImage, 2018. See Wiki for a selection of other papers that use this code.

statmech_isingmodel

surrogatemaps

Generate surrogate maps (code from Josh Burt)

timeseriesgeneration

Generating time series from a range of dynamical systems

tvb-library

The Virtual Brain scientific library. Requires external_geodesic_library