The MGnify REST API https://www.ebi.ac.uk/metagenomics/api/latest/ provides an easy-to-use set of top level resources, such as studies, samples, runs, experiment-types, biomes and annotations, that let user access metagenomics data in JSON format (JSON is an standard format for data interchange and file format). Retrieving the data is as simple as sending an HTTP request. The API return JSON objects with a defined schema that contains the resource type, associated object identifier (id) and a set of attributes. Where appropriate, relationships and links are provided to other resources.

We have utilized an interactive documentation framework (Swagger UI) to visualize and simplify interaction with the API’s resources via an HTML interface. Detailed explanations of the purpose of all resources, along with many examples, are provided to guide end-users. Documentation on how to use the endpoints is available at https://www.ebi.ac.uk/metagenomics/api/docs/.

This repo contains MGnify API examples and ENA examples.

Please refer to mgnify/README.md

Please refer to ena/README.md

Thanks goes to these wonderful people (emoji key):

Ola Tarkowska 💻📖

Martin Beracochea 💻

This project follows the all-contributors specification. Contributions of any kind welcome!

If the documentation do not answer your questions, please contact us.