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HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
HiCKRy is a tool developed by the Ay Lab to normalize HiC data using the Knight-Ruiz algorithm for matrix normalization.
HiCnv is used to call copy number variations and breakpoints from Hi-C data
HiCtrans is a pipeline to call translocations from Hi-C data
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Interaction QTL (IQTL) using HiChIP contacts
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
A standalone and lightweight C library
Snakemake based RNA-Seq QC pipeline for cloud/cluster implementation
Cross-platform C++11 header-only library for memory mapped file IO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
A Collection of Variational Autoencoders (VAE) in PyTorch.
RNA-seq data processing and QC
Stratified LD score regression analysis
SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
SIP: Significant Interaction Peak caller
Signed LD profile regression
Multi-cell type gene co-expression network analysis reveals coordinated interferon response and cross cell-type correlations in SLE
Web application to explore the Sequence Read Archive.
Extract data quickly from Juicebox via straw
A collection of command-line tools I wrote to make various repetitive tasks more convenient
Various utility scripts for 3C data analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.