arvestad Goto Github PK
Name: Lars Arvestad
Type: User
Company: Stockholm University
Location: Kräftriket, Stockholm
Lars Arvestad's Projects
modelmatcher
Rapid identification of evolutionary models
neighborhood_correlation
An update of Durand and Joseph's Neighborhood Correlation tool for assessing protein sequence similarity
pahmm-dist
paHMM-Tree - distance-based pairwise statistical phylogenetic distance estimation using pair hidden Markov models
participation
Compute expected number of participants based on self-reported probability of participation.
personnummer
Validate Swedish personal identity numbers
petimeter
Tool for assessing assembly quality using full length cDNA
primetv2
A tool to visualize reconciled trees
primetv2forweb
refsense
robinson_foulds
A simple command line tool for computing the Robinson-Foulds distance given two trees, using the ETE toolkit.
seqtools
Some simple utilities
simspliceevol
SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
snc
My version of Neighborhood Correlation sequence comparisons
snitt
Sample code for DA3018
spruce_genome_project
Set of tools to assist spurce2.0 project
summera
Add points in exams. Using LaTeX and a macro 'poang{3}' for showing 3 points for a question, I want it to be easy to add up how many points I have added to the exam.
tab2table
tree_matching_distance
An implementation of the tree distance metric suggested by Lin, Rajan, and Moret, at ISBRA 2011.
try_git
vrbiostat
An analysis of success rates at VR-NT 2008-2016
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