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covid_svk's Introduction

IBM model code

Complements analysis for "The effectiveness of population-wide, rapid antigen test based screening in reducing SARS-CoV-2 infection prevalence in Slovakia"

Dependencies

R packages:

  install.packages("Rcpp", "RcppGSL", "data.table", "ggplot2", "patchwork", "readxl", "distcrete", "qs", "tictoc")

C++ libraries

#include <iostream>
#include <vector>
#include <cstdlib>
#include <Rcpp.h>
#include <omp.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>

  • To run model scenarios, use script: scenario_modelling.R ** calls ./scripts/functions.R ** calls ./scripts/read_data.R ** compiles ./model/covidIBM.cpp

  • To create plots from output, use script: process_outputs.R

covid_svk's People

Contributors

kevinvzandvoort avatar

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