Comments (4)
arq5x
commented on August 16, 2024
Should be simple enough. Will hack tonight once I complete a manuscript review.
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arq5x
commented on August 16, 2024
Could you shoot me (email) a problematic file so I can ensure the code works?
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arq5x
commented on August 16, 2024
I can't replicate the exact error on my system using the file you sent me, but I can see that h5dump fails. I added a try/except check that should simply raise a warning and move on. Let me know if this doesn't work for you.
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lonelyjoeparker
commented on August 16, 2024
Referenced in ONT wiki https://wiki.nanoporetech.com/questions/36962933/fastq-extaction-stops-due-to-corrupt-file - seems like not all exceptions are being caught.
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Related Issues (20)
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