Related Issues (20)
- Issue in merge (0-based or 1-based) [v2.28.0] HOT 1
- getfasta coordinates error? HOT 1
- Is there a default <GENOME> in bedToBam?
- NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method. HOT 1
- bedtools jaccard segmentation fault HOT 2
- coverage strand count not accurate compared to samtools for paired end alignment
- Feature request: allow stdin/stdout with maskfasta
- maskfasta mangles files with mixed line-endings HOT 1
- Feature request force strandedness (`-s`) for complement
- Bedtools getfasta and ORF from a blastX run
- Extract all genes within 5 kb, 10 kb of a genomic range. HOT 1
- bedtools fisher - how the possible intervals estimated?
- Including the cigar field when in bamToBed with the -splitD argument HOT 1
- bedtools makewindows with large genome size
- Merge delimiter for input file to define how to number columns
- has inconsistent naming convention for record
- Reads doubled when using `bamtofastq`
- Multiinter for BEDPE files?
- bedtools getFASTA is not converting a whole BED file HOT 10
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