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Anup Kumar's Projects

predict_animal_behaviour icon predict_animal_behaviour

Predicting animal behaviour using deep learning (https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.12926)

prottrans icon prottrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

rnn-tutorial-rnnlm icon rnn-tutorial-rnnlm

Recurrent Neural Network Tutorial, Part 2 - Implementing a RNN in Python and Theano

rprop icon rprop

Backpropagation algorithm used in Optimization (Machine Learning)

sars-cov-2 icon sars-cov-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scgan icon scgan

Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

scgat icon scgat

Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.org/abs/2002.07128>

scigans icon scigans

Generative adversarial networks for single-cell RNA-seq imputation

scikit-optimize icon scikit-optimize

Sequential model-based optimization with a `scipy.optimize` interface

scvi-tools icon scvi-tools

Deep generative models for single-cell omics data

self-instruct icon self-instruct

Aligning pretrained language models with instruction data generated by themselves.

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