Pairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)
License: GNU General Public License v3.0
Python 94.70%Shell 5.30%
pairwise-alignment-in-python's Introduction
Pairwise string alignment in Python
My contribution will be:
* Code cleanup
* Support of arbitrary alphabets of input strings (no similarity matrix)
* Support of both variants:
1. Smith-Waterman = local alignment
2. Needleman-Wunsch = global alignment
Original Smith-Waterman implementation in Python was forked from
http://narnia.cs.ttu.edu/drupal/node/104
by Forrest Sheng Bao http://fsbao.net
a free software licensed under GNU General Public License (GPL)
A copy of GPL version 3 has been placed into the file LICENSE.