animesh Goto Github PK

privategpt

Interact privately with your documents using the power of GPT, 100% privately, no data leaks

professional-programming

A collection of learning resources for curious software engineers

prolfqua

R package for protein differential expression analysis

promec-indexer

Index Commet Data into Elasticsearch

promec-watcher

A Watcher whose task is to watch a directory and once a change detected, launch a Comet-indexer job in kubernetes using Job API

promise

PROMISE is a distributed pipeline to detect post-translation modification on Mass Spectrometry data. The pipeline is solely for academic research, non-commercial or educational purposes; for other uses, please contact Weizmann institution.

prompts-for-edu

prompttools

Open-source tools for prompt testing and experimentation, with support for both LLMs (e.g. OpenAI, LLaMA) and vector databases (e.g. Chroma, Weaviate, LanceDB).

pronto

A Python frontend to (Open Biomedical) Ontologies.

prospr

ProSPr: Protein Structure Prediction

protein-contaminant-libraries-for-dda-and-dia-proteomics

This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C..(Publication pending) This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.

protein-inference-md

A python package for protein inference in Mass Spectrometric data analysis.

protein-localization

Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of proteins :microscope:

protein-turnover

Matlab GUI

protein_bert

proteinfer

proteinmpnn

Code for the ProteinMPNN paper

proteinnet

Standardized data set for machine learning of protein structure

proteinnetworklrp

Predicting patient-level proteomic networks by explainable artificial intelligence

proteoformer

Integration ribosome profiling - mass spectrometry

proteogenomics_python

python scripts for proteogenomics analysis

proteomas

PROTEOMAS is a workflow for proteomics meta-analysis of LFQ data.

proteomesoflife

python based queries for the proteomesoflife neo4j network database

proteomics-metadata-standard

The Sample to Data file format for Proteomics

proteomics_imputation

proteomicslfq

Proteomics label-free quantification (LFQ) analysis pipeline

proteomicsvisualization

This is a collection of minimal code to visualize various aspects of proteomics data.

proteoviz

Interactive tool for Phosphoproteomics

protrank

Python package for differential abundance analysis of proteomics data

protstatmd