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pybedforms's Introduction

pybedforms

'pybedforms' is a Python version of 'Bedforms 4.0', a Matlab program written by David Rubin and Carissa Carter (see this USGS publication and this interactive webpage). The bedform topographies are created in exactly the same way as they were in Bedforms 4.0; however, the 3D visualization is different. We use Mayavi to build the block diagrams; these plotting functions were simplified from the 'blockdiagram' Python package. All the key classes and functions are in the 'dune_topo.py' module. The 'Notebook_with_examples' jupyter notebook illustrates how to build bedform models using (1) the default parameters and (2) a set of parameters predefined by Rubin & Carter. The model can be visualized as a block diagram using the "plot_3D" function:

You can also extract a "core" from the model and visualize it in 3D:

Requirements

  • matplotlib
  • numpy
  • mayavi
  • skimage
  • scipy
  • tqdm

pybedforms's People

Contributors

andrewannex avatar richardscottoz avatar zsylvester avatar

Stargazers

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Watchers

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Forkers

zsylvester cazierec isaacabrahamodeh richardscottoz antoinecollet5

pybedforms's Issues

add tests

use all example run files to make tests happen, autogenerate figures for docs down the road

Dead kernel

Hi there. My kernel dies running the block diagram cell of the notebook_with_examples . I'm running python 3, and I'm pretty sure I've installed all the prerequisites. Any ideas?

expand cli, parsing of matlab parameter files

for this project I opted to use a portion of the standard library to allow the parsing of cfg files, it would be nice to be able to provide converters to transform matlab parameter files/allow direct use of matlab parameter files

remove matlab code

make a new repo that mirrors the matlab code for posterity. this is a python project!

make mayavi optional

I use pyvista primarily, would be nice to make the visualization aspects more optional/plugable

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