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Start-to-end photon experiment simulation platform
License: GNU General Public License v3.0
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simex_platform's Issues
Remove dependencies
The following declared dependencies are actually not used:
+#The following are actually not used anywere in Sources
+find_python_module(breathe REQUIRED)
+find_python_module(sqlalchemy REQUIRED)
+find_python_module(pyfftw REQUIRED)
+find_python_module(numba REQUIRED) #Used in Modules/Diffractors/SingFELPhotonDiffractor
+find_python_module(PyQt4 REQUIRED)
Wrong use of options for variables in top cmake file
In the top cmake file instead of using set option is used for paths.
Create system to declare dependencies
Create a cmake function to declare and store (e.g. in requirements.txt) python dependencies.
It should be a utility function called/used in cmake.
Additional options for testing or CI should be declared
unittest fails
cd Tests/python/unittest && python Tests.py fails with:
testBackengine (SimExTest.Calculators.SingFELPhotonDiffractorTest.SingFELPhotonDiffractorTest)
Test that we can start a test calculation. ... Traceback (most recent call last):
File "/geant4/adotti/LCLSII/SimEx/py27/bin/radiationDamageMPI", line 9, in <module>
main(parameters=parameters)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamageMPI.py", line 26, in main
slave_diffract(comm, parameters)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamageMPI.py", line 94, in slave_diffract
Traceback (most recent call last):
File "/geant4/adotti/LCLSII/SimEx/py27/bin/radiationDamageMPI", line 9, in <module>
main(parameters=parameters)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamageMPI.py", line 26, in main
slave_diffract(comm, parameters)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamageMPI.py", line 94, in slave_diffract
MakeOneDiffr(myQuaternions, counter, parameters, outputName)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamage.py", line 116, in MakeOneDiffr
setEnergyFromFile(inputName, beam)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamage.py", line 46, in setEnergyFromFile
with h5py.File(fname, 'r') as f:
File "/scratch/geant4/adotti/LCLSII/SimEx/py27/venv/lib/python2.7/site-packages/h5py/_hl/files.py", line 269, in __init__
MakeOneDiffr(myQuaternions, counter, parameters, outputName)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamage.py", line 116, in MakeOneDiffr
setEnergyFromFile(inputName, beam)
File "/geant4/adotti/LCLSII/SimEx/py27/lib/python2.7/pysingfel/radiationDamage.py", line 46, in setEnergyFromFile
with h5py.File(fname, 'r') as f:
File "/scratch/geant4/adotti/LCLSII/SimEx/py27/venv/lib/python2.7/site-packages/h5py/_hl/files.py", line 269, in __init__
fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr)
File "/scratch/geant4/adotti/LCLSII/SimEx/py27/venv/lib/python2.7/site-packages/h5py/_hl/files.py", line 99, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
fid = make_fid(name, mode, userblock_size, fapl, swmr=swmr)
File "/scratch/geant4/adotti/LCLSII/SimEx/py27/venv/lib/python2.7/site-packages/h5py/_hl/files.py", line 99, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 78, in h5py.h5f.open
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
IOError: Unable to open file (file signature not found)
File "h5py/h5f.pyx", line 78, in h5py.h5f.open
IOError: Unable to open file (file signature not found)
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