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Deep-Learning

The assignments for AIST4010 Foundation of Applied Deep Learning, which are Kaggle competitions on image, sequence and graph tasks.

Tasks:

Table 1. Topic and competition result of different tasks

Task Topic Evaluation Metric Public Result Private Result
0 IRIS Classification Mean F1-Score 1.00000 1.00000
1 Face Classification Accuracy 0.88440 0.89021
2 Antibiotic Resistance Genes Prediction Macro F1-Score 0.99018 0.96393
3 Graph Node Classification Accuracy 0.80386 0.78934

Packages Imported:

  • To install package, type the following command in a terminal:
pip install <package_name>

General Packages:

  1. numpy: scientific computations
  2. pandas: importing and exporting data from / to csv
  3. matplotlib: graph plotting
  4. sklearn: machine learning algorithms, data preprocessing, evaluation metrics
  5. natsort: sorting of list data
  6. torch: deep learning related algorithms

Specific Packages for Task 1:

  1. torchvision: dataset and data augmentation for images
  2. facenet_pytorch: pre-trained Inception Resnet v1 model on face dataset

Specific Packages for Task 2:

  1. Bio: loading protein sequence data
  2. transformers: pretrained BERT model on protein dataset and trainer

Specific Packages for Task 3:

  1. torch_geometric: graph neural network algorithms

Files:

  1. aist4010-asm<N>.ipynb

    • Code of the method used in Task N
  2. AIST4010 Assignment <N>.pdf

    • Specification of Task N

Output:

  1. output.csv

    • Output file of the code
  2. aist4010-spring2022-a<N>-publicleaderboard.csv

    • The public leaderboard used to select the best model for Task N
  3. aist4010-spring2022-a<N>-privateleaderboard.csv

    • The private leaderboard used to determine the rank of Task N

Achievement:

  • 2nd place (out of 28 teams) in Task 1
  • 1st place (out of 31 teams) in Task 2
  • 2nd place (out of 8 teams) in Task 3

© 2022 Andes Kei

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