seq                   The protein sequence to be encoded.

-h, --help            show this help message and exit
  
--encoding_type ENCODING_TYPE      
                      The encoding type. [One_hot, One_hot_6_bit,
                           Binary_5_bit, Hydrophobicity_matrix,
                           Meiler_parameters, Acthely_factors, PAM250, BLOSUM62,
                           Miyazawa_energies, Micheletti_potentials, AESNN3,
                           ANN4D, ProtVec]. 
                      Default: One_hot.
                    
--overlap             The word extraction strategy for ProtVec encoding: overlap.
                    
--non-overlap         The word extraction strategy for ProtVec encoding: non-overlap.