Comments (1)
Splitting this issue into downloading taxonomy files and downloading assembly_summary files.
from kraken-trawl.
Related Issues (15)
- Use `--file-pair-list` command with aspera HOT 1
- Document and wire in test
- assembly_summary_genbank.txt has `na` for some assemblies in the `ftp_path` column, which causes the script to fail
- Parallel add genomes to kraken staging area?
- Keep aspera file manifest data as a log
- Using $HOME/bin versus $HOME/.local/bin HOT 3
- Add an example to README.md HOT 3
- Remove use of Entrez searches for taxid, and favour searching species ID column in assembly summary file HOT 1
- Add functionality to control filtering
- Add some of Kai Blin's ncbi-genome-download functionality
- Make pip installable
- Add refweak blacklist
- Add automatic injection of Illumina adapters into DB.
- Add functionality to download latest taxonomy files when creating a new database.
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from kraken-trawl.