andersgs Goto Github PK

andersgs.github.io

My page with blogdown

beast2_constsites

Update your BEAST2 XML to account for constant sites

beastify

Partition your alignment into distinct codon positions and non-coding positions

bsibayes

An R package for Bayesian analysis of messy epidemiological data

canberra_workshop_day2

db-check

Sanity check your FASTA DB

dnabarcodereader

Automate DNA barcode assembly, quality control, and query

dnabarcodes

Automated DNA barcode assembly, quality control, and annotation

flylips

A tool to fit ellipses to Drosophila wings

harrietr

An `R` package for various phylogenetic and evolutionary biology data manipulations

irelr

An R package that implements the functionality of iRel

kraken-trawl

A tool to help create custom `kraken` databases

lissero

In silico serotype prediction for Listeria monocytogenes

mask_plasmid

Generate a quick BED file of a Genbank file to feed into Snippy4 --mask

measuringnaturalselection

Code used in the chapter Measuring Natural Selection

meningotype

In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

microsimr

microsimr

mig-converter

Convert Migrate-N output from M to Nm

migverify

Check your sequence Migrate-N infiles for monomorphic loci and too many missing data

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mycv

My CV

nullarbor_translate

Translate the Nullarbor output into any format using Jinja2 templates

pop_gen_scripts

A repo for some of my collection of population genetic scripts

py_fasta_validator

A Python extension of the fasta validator

slim-containers

Slimmer container for bioinformatics using conda

thedaggiebinfie

My website

transtreesampler

Sample transmission trees using Outbreaker2

vs-locus

A tool to mine vsearch cluster results for haplotypes

workflows

Community maintained workflows & tools (with examples)