alisterburt / dynamo2emclarity Goto Github PK

🙃 Alister Burt                                                                                     
┣━━ 🔬 Research Interests                                                                           
┃   ┣━━ cryo-electron tomography - enabling in situ protein structure determination                 
┃   ┗━━ bacterial chemotaxis - how bacteria sense and respond to nutrients/toxins                   
┣━━ 📦 Open Source Packages                                                                         
┃   ┣━━ napari - n-dimensional data visualisation in Python                                         
┃   ┣━━ blik - browse cryo-ET data and annotations in napari                                        
┃   ┣━━ napari-animation - make animations in napari                                                
┃   ┣━━ dynamo2m - combine dynamo and warp/relion/m                                                 
┃   ┣━━ eulerangles - fast conversion of large sets of Euler angles                                 
┃   ┗━━ starfile - STAR file IO in Python                                                           
┣━━ ⭐ Web Projects                                                                              
┃   ┗━━ teamtomo.org   - cryo-ET knowledge platform                                                 
┣━━ 🎙️ Teaching                                                                                      
┃   ┣━━ EMBO image processing for cryo electron microscopy                                          
┃   ┣━━ EMBO advanced methods in bioimage analysis                                                  
┃   ┣━━ EMBO cryo-electron microscopy and 3D image processing                                       
┃   ┣━━ Dynamo workshop - Basel, CH                                                                 
┃   ┣━━ Intro to bioinformatics - Université Grenoble Alpes                                         
┃   ┗━━ Multidisciplinary experimental methods - Université Grenoble Alpes                          
┗━━ 👨‍💻 Employer                                                                                   
    ┣━━ MRC-LMB - Postdoc in David Barford's group                                                  
    ┗━━ ⏰ Previously...                                                                            
        ┣━━ CCP-EM - collaborative computational project for electron microscopy                    
        ┗━━ Institut de Biologie Structurale - PhD student in Irina Gutsche's group
        ┣━━ Diamond Light Source - Intern on B24                                                    
        ┗━━ CHyM - Intern                           

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